Personal Background

I have been interested in astronomy, since I was 12 years old. I attended a boarding school from age 10 to 14. The school had a sizable collection of minerals that stirred my interest. Asking a teacher for literature about minerals he told me that he had nothing suitable for a person of my age, but that he had some books about stars that might interest me.
I began to read the books he gave to me and became more interested in astronomy. The r taught me Kepler"s laws of planetary motion. With his help and a considerable collection of eye glasses and cardboard cylinders in the teacher's possession, and with his help I built my first refractor telescope. I became sure that I wanted to become an astronomer when I were to enter university.

University Studies

At the beginnining of the summer semester 1970 I enrolled at the Universität Münster. It was the university closest to my hometown and the only university in Germany where one could choose astronomy as the major subject. Sometime during the semester Prof. Straßl, the director of the astronomical institute, advised me to leave and go elsewhere because the institute as he said was too small to provide me with a decent education. He had a point: the instiute consisted of one professor, his assistant and one student, me.

I set out to look for an alternative, first visiting Bonn where I rented a room right away, applied for admission to study physics in Heidelberg and finally visited Göttingen. I got admiitted for study in Heidelberg, but when walking through the streets of Göttingen, I knew that this was the town where i wanted to study. A small town, breathing history on every corner, the place where Gauss and Hilbert had worked, one of the birthplaces of quantum mechanics and with an astronomical observatory built during Gauss' lifetime.

Admission in Göttongen was also restricted and the application deadline had already passed. I consulted Prof. Kippenhahn who engaged in theoretical astrophysics and he suggested that I start by studiyng mathematica first and switch to physics after the Vordiplom (approx. B.Sc.). So I did. After 3 semesters I obtained the Vordiplom. Meanwhile I had decided that I was no longer interested in science and began to study English literature and history for 3 semesters. Then my love for astronomy returned and I switched again, to physics. Under the supervision of Willi Deinzer I investigated the generation of magnetic fields in the cores of massive stars.

M.Sc. Thesis

In my thesis I studied the mechanism of $\alpha$-effect dynamos driven by turbulent plasma motion, when currents flow through magnetic fields. The sun's and the earth's magnetic fields are generated by such dynamo action. While research thus far had focussed on $\alpha\omega$-dynamos, where the $\alpha$-effect and differential rotation work together to produce magnetic fields, my work showed that the $\alpha$-effect alone was sufficient. Such a dynamo is called an $\alpha^2$-dynamo. An unexpected side result with a model consisting of a convecrive core surrounded by a radiative shell behaves quite different as a function of $\alpha$-effect strength compared to $\alpha\omega$-dynamos. An existing field decays extremely slowly, when the effect is weak and begins to grow when a threshold is crossed.

Thesis Title

$\alpha^2$ Dynamos in den konvektiven Kernen massereicher Sterne
$\alpha^2$ dynmos in the convective cores of massive stars

Publication

Manfred Schüßler, Arno Pähler
Diffusion of a Strong Internal Magnetic Field through the Radiative Envelope of a 2.25 $M_{\odot}$ star
Astron. & Astrophys. 68, 57-62 (1978)

The publication was last cited in a research paper in July 2023.

Personal Background

Minerals had lead me to astronomy at the age of 12. I studied astronomy and was intent on continuing this path. While pondering my next steps, a part-time job changed my future forever.
A scientist, Wolfram Saenger, at the Max-Planck-Institut für experimentelle Medizin in Göttingen, was offering a programmer part-time position. I interviewed and was accepted. At the end of the interview he asked me whether I would be interested to becocme a graduate student in his research team. Initially I declined but left the final decision open.

Disaster in Bonn

During a party at the Sternwarte in Göttingen one of my former professors suggested that I contact Peter Mezger at the Max-Planck- Institut für Radioastronomie. After having arranged a visit to Bonn I discussed my options with Mezger. At the end everything seemed settled: I would join his department as a graduate student and a professor in Göttingen would act as my official thesis supervisor. Then came Mezger"s final question: "Und wovon wollen Sie leben?" - "How do you want to cover your living expenses?".
This one question ended my astronomical career. I pointed out to him that the Max-Planck-Gesellschaft offered grants for graduate students. He demured, telling me that he had no money to support me. It was likely not meant seriously: I was contacted multiple times thereafter asking when I would move to Bonn. I never replied but ultimately got tired and sent a reply that I woudl never come.

I returned to Göttingen the same afternoon, talked to Saenger and asked whether he still wanted me as a grauate student. He said yes and from that moment on I became a protein crystallographer, spending most of my scientific career in that field.

Professional Activities

I have worked in research institutes, universities and pharmaceutical companies in Germany, the USA and Japan. Most of that time was spent in Japan, where I lived and worked for 16 years.

Research Institutes

  • MPI für experimentelle Medizin, Göttingen, DE
  • PERI, Osaka, JP
  • RIKEN, Harima, JP

Universities

  • MIT, Cambridge, MA, US
  • Universität Göttingen, Göttingen, DE
  • Freie Universität Berlin, Berlin, DE
  • Columbia University, New York, NY, US
  • Osaka University,s Osaka, JP

Companies

  • Taisho Seiyaku, Ohmiya, JP
  • Mitsubishi Kagaku, Yokohama, JP
  • Syrrx, San Diegp, CA, US

Multi-wavelength Anomalous Diffraction (MAD)

The most important contibution that I made to protein crystallography was my involvement in the development of multi-wavelength anomalous difraction. The method was mostly developed by W. Hendriclson and J. Smith. I made minor contributions to the theory and was the first person to successfully apply it, jointly with Hendrickson and Smith, to determine an unknown structure with this technique. It is now the standard method in the field, together with single-wavelength anomalous diffraction.

Publication

W. A. Hendrickson, A. Pähler, J. L. Smith, Y. Satow, E. A. Merritt, R. P. Phizackerley
Crystal structure of core streptavidin determined from multiwavelength anomalous diffraction of synchrotron radiarion
PNAS 86, 2180-2184 (1989)

Computing

My earliest exposure to computers was at the age of 16, when I took a correspondence course "Programming of Hollerith Machines". They work with punched cards, switchboards and cables to program them. The next step was learning Algol-60 in my second semester as a mathematics student.
While I studied mathematics, I took a courseabout numerical mathematics.The two terms I liked best were ADI for alternating directions implicit (method) and SOR for successive overrelaxation. Both are used to solve partial differential equations.
One rule that we were told to always respect was: If you need to divide more than once by the same value, calcuate the reciprocal of that vallue and mutliply by it. That is, because even today, division is much slower than multiplication.

Programming languages

My first "programming language" was of course switchboards and cables. After that in 1971 Algol-60 and from 1973 Fortran and more modern variants of Fortran. Since then I have learned a substantial number of languages, some of which are listed below in mostly chronological order. My favorite and almost exclusively used language is Python. Languages that I currently actively use are underlined..
Tools like HTML, CSS and Javascript that I use to develop this website I do not usually employ. HTML is generated via Pug/Jade and CSS via Stylus. The framework is Flask. The entire code consists of Python, Pug/Jade, CSS and Javascript. HTMl is created on the fly from Pug templates with PyPugJS. Bootstrap or Foundation and jQuery scripts and Bootstrap or Foundation CSS are also used.
  • Algol-60
  • Fortran
  • Assemblers
  • Pascal, Modula
  • C / C++
  • Tcl / Tk
  • Python
  • Ada
  • Cuda, OpenCL
  • Julia

Algebra

Algebraic Structures

One can arrange algebraic structures by increasing gemerality. The most commonly known structures are
  • Monoids
  • Groups
  • Rings
  • Fields
This describes a hierarchy, such that for instance groups are more general than monoids, but have a monoid structure as well as a group structure. Sloppily once could write
$$ \large{\text{Field}\supset\text{Ring}\supset \text{Group}\supset\text{Monoid}} $$

Sets

Sets are at the heart of modern mathematics. Sets are collections of objects, such that an object's membership in a set is defined by some predicate(s). They were formalized by Dedekind and Cantpr in the late 19th century and have become an indispensible construct of modern mathematics.
For instance, the collection ..., -1, 0, 1, ... is the set of all integers, written $\mathbb{Z}$. This set is a subset of rational numbers $\mathbb{Q}$ and the rationals are called a superset of the integers, expressed by
$$ \large{\mathbb{Z}\subset\mathbb{Q}\quad\text{and}\quad \mathbb{Q}\supset\mathbb{Z}} $$
Operations like $\text{Union}\ \cup$ or $\text{Intersection}\ \cap$ can be performed on pairs of sets, thus creating new sets. The intersection of two sets S and T, for instance, consiste of all objects that belong to S as well as T.

Mappings

Mappings, together with the sets they operate on, are the second of two buildong blocks used to define algebraic structures. A mapping between two sets S and T can be written as
$$ \large{ \begin{gather} m: S\mapsto T\\ x\in S\Rightarrow m(x)\in T \end{gather}} $$
One distinguishes between three types of mapping, surjective, injective and bijective:
$$ \text{m is} \begin{cases} \text{surjective} & \forall y\in T\ \exists x\in S\\ & m(x) = y\\ \text{injective} & \forall x,\,y\in S\\ & m(x) = m(y)\Rightarrow x = y\\ \text{bijective} & \text{surjective and injective} \end{cases} $$

Basic Algebraic Structures

With sets and mappings between sets explained, one can proceed to define algebraic structures. Mappings between such structures are usually called homomorphisms when they preserve the algebraic structure of the sets they operate on.
The basics of the structures mentioned above can be defined by a few simple axioms. When defined they are abstract, but have far-reaching uses in modern physics. Groups in particular are an indispensible tool in pjysics. Together with Noether's theorem they lead to all the conservation laws of physics, conservation of energy, linear and angular momentum and so on.

Monoids

Monoids in general are not as familiar as the other three structures mentioned above. Simply put, they are groups without imverse elements. Therefore grpups are also monoids.
They consist of a set M and a mapping $\circ : M\times M\mapsto M$ with the following properties $$ \begin{gather} \circ:\ M\times M\mapsto M\quad (a,\,b)\mapsto\ a\circ b\\ \forall a,\,b\in M\quad a\circ b\in M\\ a\circ(b\circ c) = (a\circ b)\circ c\\ \exists e\in M\ \forall a\in M\quad e\circ a = a\circ e = a \end{gather} $$
It is easy to show that the unit element e is unique along the lines one can often find in mathematical texts: "The proof is trivial and left as an exercise for the reader."
Monoids are not as rare as one might think. For instance, the set of integer numbers $\mathbb{Z}$ with multiplication as the mapping is a monoid, but not a group. On the other hand $\mathbb{Z}$ with addition is a group.

Groups

Next in the hierrachy of algebraic structures are groups. Groups are an extremely important structure in modern physics and can occur in many manifestations. There are finite groups with a defined number of elements $|G| < \infty$ and groups with an infinite number of elements. They extend monoids by introducing an inverse.
$${\forall g\in G\ \exists h\in G\ \quad g\circ h = e}$$
Again it is eas to show that the inverse of every element is unique and that $g\circ h = h\circ g$.
When $\forall a,\,b\in G\quad a\circ b = b\circ a$, the group is called commutative or abelian. Not every group is abelian.

Examples

$\mathbb{Z}$ with adition is an infinite abelian group. The simplest finite group may be $\{-1,\,1\}$ with multiplication. 1 is the unit element and each element is its own inverse. Such objects are called idempotent $a\circ a = e$. This subset of integers is the only set of integers that forms a group under multiplication. It is not a group under addition, because $1 + 1 = 2\notin \{-1,\,1\}$.

$2\mathbb{Z}$, the subset of even integers, is a group under addition, but the subset of odd integers $2\mathbb{Z}+1$ is not, because the sum of two odd integers is even. $2\mathbb{Z}$ is called a subgroup of $\mathbb{Z}$. It is a normal subgroup defined by
$$ \large{ \begin{gather} 2\mathbb{Z}\subset\mathbb{Z}\\ \forall n\in\mathbb{Z}\quad n+2\mathbb{Z} = 2\mathbb{Z}+n \end{gather}} $$

Rings

Monoids and groups are sets endowed with one kind of mapping. Rings and Fields extend the concept by introducing a second kind of mapping. In the structures that most people are familiar with, rational, real and complex numbers, these mappings are called addition and multiplication. The simplest way to characterize the ring structure of a set R with mappings + and $\times$ written as $(R, +, \times)$, is:
  1. (R, +) is an abelian group
  2. $\forall a,\,b,\,c\in R\,: a\times (b\times c) = (a\times b)\times c$
  3. $\forall a,\,b,\,c\in R\,: a\times (b + c) = a\times b + a\times c$
  4. $\forall a,\,b,\,c\in R\,: (a + b)\times c = a\times c + b\times c$
Rule 4 is necessary because (R, $\times$) need not be commutative. An example is a ring formed by matrices that may or may not have multiplicative inverses for some or all elements (e.g. det M = 0). The existence of a multiplicative unit element is not required, but also not excluded. The latter care clled rings with unity. Hence with respect to multiplication R may be less than a monoid. Other examples of rings are $\mathbb{Z}$ and $\mathbb{Z}/n\mathbb{Z}$, the second one being the ubtegere modulo n. a finite ring, as the underlying set consists of the integers from 0 to n - 1 inclusive. In bozj cases, as already mentioned in the Group section, there are no multiplicative inverses. Elements $a\in R$ of a ring such that $\exists b\ne 0 \in R$ with $a\times b = 0$ are called zero divisors. An example would be $\mathbb{Z}/4\mathbb{Z}$, since $2\times 2 = 0$ modulo 4. More generally any n that is the square of another number, $n = k^2\quad k\times k = 0$ modulo n.

Fields

If, additionally, a ring (R, + $\times$) under multiplication, is not just associative, but a group, it is called a field. The additive unit element must however be excluded from the multiplicative set, but not from the field itself. Multiplication of any element of R with 0 is 0. The definition of (F, +, $\times$) thus is:
  1. F is a ring
  2. (F \ {0}, $\times$) is an abelian group
In the hierarchy $\mathbb{N}\subset\mathbb{Z}\subset\mathbb{Q}\subset\mathbb{R}\subset\mathbb{C}$ all of them are rings, but fields start with $\mathbb{Q}$. A less familiar example of a field is $\mathbb{Z}/p\mathbb{Z}$, the set of integers modulo a prime number p. 1 is always its own inverse and for p = 5 we have 2 x 3 = 3 x 2 = 4 x 4 = 1. 0 and p are not part of the multiplicative set, 0 by definition and p because p = 0 modulo p. The number of elements in the set is p - 1.

Special Relativity

Origin

In 1905, following the failure osf the Michelson-Morley experiment to prove the existence of an ether as the carrier medium of light, Albert Einstein published two seminal papers.
The first introduced the concept of photons to explain the photoelectric effect. This paper earned him the 1921 Nobel prize in physics. The second paper, "Zur Elektrodynamik bewegter Körper" established the theory of special relativity.
Underlying it is the concept of inertial frames of reference. Two objects moving relative to each other and each having attached a local frame of reference (coordinte system). Inertial frames of reference are those moving with constant velocity. Zhey neither change their speed nor their direction of motion.

Two Principles of SR

  • No object can move faster than the speed of light in vacuum.
  • The laws of physics are the same in all inertial reference frames.
Gravitation has no place in this theory. That comes later with GR. The consequences nevertheless are profound. The relation between two inertial frames is described by the Lorentz transform. Time and space are both parts of a 4-dimensional spacetime. Effects like time dilation and length contraction, increase of mass-weight with increasing speed, the equivalence of mass and energy. These are all effects that have been experimentally confirmed, most dramatically $E = m\,c^2$ in nuclear weapons, for instance hydrogen bombs, as the difference $4\times m_H - m_{He} > 0$ is converted into energy. The same process takes place inside stars like the the sun, making life on earth possible.

Spacetime and Lorentz Transform

Space and time do not exist as separate entities, but jointly form a 4-dimension space, named spacetime. Its coordinates are
$$(ct,\, x,\, y,\, z) = (x^0,\, x^1,\, x^2,\, x^3) = \vec{x}$$
Given one inertial frame of reference with coordinates $\vec{x'}$ and another one with coordinates $\vec{x}$ and constant inter-frame velocity $\vec{\beta} = c^{-1}\vec{v}$ and with the Lorentz factor defined as $\gamma = (1 - \vec{\beta}\cdot\vec{\beta})^{-1/2}$ the Lorentz transform is defined by
$$ \large{ \begin{align} x'^0 &= \gamma\,(x^0 - \vec{\beta}\cdot\vec{X}) \\ \vec{X'}_{||\,\vec{\beta}} &= \gamma\,(-\vec{\beta}\,x^0 + \vec{X}_{||\,\vec{\beta}})\\ \vec{X'}_{\perp\,\vec{\beta}} &= \vec{X}_{\perp\,\vec{\beta}} \end{align}} $$
In the equations $\vec{X} = (x,\,y,\,z)$ is the spatial component of $\vec{x}$ In the literature one may find equations, where the x-axis is chosen parallel to the direction of motion. The component of $\vec{X}$ normal to the direction of motion remains unchanged.

Boost and Rotation

.h4tag.sp1. The transform shown above is only one part of the full Lorentz transform. It is called the Lorentz boost and is complemented by a rotation about an axis which need not conincide with $\vec{\beta}$, but usually lies in the 3-dimensional subspace formed by the spatial component. Mathematically nothing would exclude a rotation about the "time" axis. .h4tag.sp1. The inverse transform is easily obtained by simply inverting the direction of $\beta$, $\vec{\beta'} = -\vec{\beta}$. The two effects following directly from the transform are
  • time dilation
  • length contraction
The equivalence of mass and energy $E = m_0\,c^2$ follows from the concept of four-vectors and the expansion of $\gamma$ in a power series in $\beta = \sqrt{\vec{\beta}^2}$.
$$ \large{ \begin{align} B(a,\,b) &= \frac{\Gamma(a)\,\Gamma(b)}{\Gamma(a + b)}\\ \gamma &=\frac{1}{\sqrt{1 - \beta^2}}\\ &= 2\,\sum_{k = 0}^\infty \frac{(-1)^k\,\beta^{2\,k}} {B(\frac{1}{2} - k,\,k + 1)}\\ &\approx 1 + \frac{1}{2}\beta^2 + \frac{3}{8}\,\beta^4 + \frac{5}{16}\,\beta^6 + \cdots \end{align}} $$
The first term in the expansion $E_0 = \gamma(\beta = 0)\,E = m_0\,c^2$ ist the "rest" energy, that an object with $m > 0$ has, when it is not moving. The second term $m_0\,c^2\,\beta^2 / 2 = m_0\,v^2 / 2$ is the classical kinetic energy. Higher-order terms would bes undetectable in most laboratory settings, but high.energy particle physics with particle velocities appoaching c do indeed measure an increas of mass as a function of velocity.
All these efects of course only exist for the oberver at rest relative to the moving particle. For the particle itself, in its reference frame, nothing changes. Instead, if it could observe the observer, it would assign the same effects to her or him. In the paricle's frame the particle is at rest and the observer is moving.

Minkowski Space

The mathematical structure of spacetime was first explained in some detail in a talk that Hermann Minkowski gave 1908 in Göttingen. He described the nature of spacetime and its associated metric. They are now known as Minkowski space and the Minkowski metric. Expressed by a a rank-2 mmetric tensor $\eta$ and co- and contravariant rank 1 tensors the relations are
$$ \large{ \begin{align} \mathbf{\eta} &= \text{diag}\,(1,\,-1,\,-1,\,-1)\\ \vec{x} &= (\,x^0,\,\,x^1,\,\,x^2,\,\,x^3,\,)\\ &= (\,x^0,\,\vec{X}\,)\\ x_\mu &= \eta_{\mu\nu}\,x^\nu\\ ds^2 &= dx^\mu\,dx_\mu\\ &= dx^\mu\,\eta_{\mu\nu}\,dx^\nu\\ &= (dx^0)^2 - (dx^1)^2 - (dx^2)^2 - (dx^3)^2 \end{align}} $$
This describes a flat hyperbolic space. There are two signature conventions, the one above, sometimes called the East Coast convention and the West Coast convention. The naming refers to the prevalence of usage at academic institutions on the east and west coast of the USA.
$$ \mathbf{\eta} = \begin{cases} \text{diag}\,(1,\,-1,\,-1,\,-1) & \text{East Coast / Minkowski convention}\\ \text{diag}\,(-1,\,1,\,1,\,1) & \text{West Coast / Weyl convention}\\ \end{cases} $$
The west coast convention was introduced by Hermann Weyl in his 1919 book "Raum, Zeit, Materie" about general relativity. He set $x^0 = i\,c\,t$ as an imaginary number. Calculating a conventional $L_2$ norm produces the minus sign for the 0-component.

Laplace and d'Alembert Operators

The Laplace operator in $\mathbb{R}^3$ is defined as $\Delta = \nabla^2 = \sum_{i=1}^3\,\partial_i\,\partial^i$. It constitutes the spece part of the d'Alembert operator which is its equivalent for spacetime and was known long before Minkowski introduced the concept of spaceatime. The d'Alambert operator is defined as
$$ \square = \partial_\mu\,\eta_{\mu\nu}\,\partial^\nu\quad 0\le\mu,\,\nu\le 3 $$

Klein-Gordon Equation

The quantization $E\to\mathrm{i}\,\hbar\,c\,\partial_0$ and $\vec{p}\to -\mathrm{i}\,\hbar\,\nabla$, with $E_m = m_0\,c^2$ leads to the inhomogenous Klein-Gordon equation
$$ (\,\square + \frac{E_m^2}{(\hbar\,c)^2}\,)\,\psi(c\,t,\,\vec{x}) = 0 $$ $$ (\,(\hbar\,c)^2\square + E^2\,)\,\psi(c\,t,\,\vec{x}) = 0 $$
The d'Alembert operator can thus be viewed as the quantization of the momentum (or energy) four-vector.

Fourier Components

The homogenous Klein-Gordon equation $\square\,\psi = 0$ is hyperbolic, the four-version of the Laplace equation, and describes a wave with the solution $A\,e^{\mathrm{i}\,(\omega\,t - \vec{k}\cdot\vec{x})}$amd, with $a = \ln\,A$ and $z = a + \mathrm{i}\,(\omega\,t - \vec{k}\cdot\vec{x})$, can be written as $e^z$.. Conventional Fourier components involve frequency $\omega$, time t, wave vector $\vec{k} = \vec{p}\,/\,\hbar$ and spatial vector $\vec{x}$ in the combination $\omega\,t - \vec{k}\cdot\vec{x}$. Defining $E_\omega = \hbar\,\omega$ and $\vec{E}_p = c\,\vec{p}\ $ one obtains
$$ \begin{align} \omega\,t - \vec{k}\cdot\vec{x} &= \frac{E_\omega\,c\,t - \vec{E}_p\cdot\vec{x}}{\hbar\,c}\\ \\ &= \frac{E^\mu\,\eta_{\mu\nu}\,x^\nu}{\hbar\,c} \end{align} $$
Here $\{E^\mu\} = \{E_\omega,\,\vec{E}_p\}$ is the four-energy (equivalent to four-momentum) and $\{x^\nu\} = \{c\,t,\,\vec{x}\}$ is the Minkowski spacetime coordinate. In SI units both numerator and demominator have dimenion $J\,m$. and the fraction, as it should, is dimensionless.